Sophia Tang

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sophtang [at] seas.upenn.edu

Hi! I am a third-year undergraduate student at the University of Pennsylvania conducting research in generative ML for scientific discovery. Aside from research, I study computer science and statistics in the Jerome Fisher Program in Management & Technology.

Currently, I’m part of the Chatterjee Lab, developing theoretical ML frameworks for biological design, and the Mitchell Lab, designing lipid nanoparticle (LNP)-based delivery vehicles to transport mRNA across the blood-brain barrier.

My research ranges from developing theoretical Schrödinger bridge frameworks for generative modelling of branching and interacting particle systems to multi-objective RL and guidance techniques for discrete diffusion - but I’m always exploring new theoretical ideas and thinking about interesting problems to apply them to!

I also write technical articles on my Substack, Alchemy Bio. My most read article, “A Complete Guide to Spherical Equivariant Graph Transformers” is a 2.5-hour long read breaking down the mathematics and physics underlying the structural deep learning architectures for molecules and proteins.

If you’re also passionate about any of these topics, I would love to connect via LinkedIn or X.

Updates

Oct 11, 2025 EntangledSBM is out! Read our paper on simulating interacting multi-particle systems with a novel Schrödinger bridge matching framework! We will present this work at NeurIPS in the FPI and SPIGM workshops, so come say hi!
Sep 30, 2025 TR2-D2 is out! Read our paper on off-policy RL for discrete diffusion fine-tuning with multi-objective rewards!
Jun 11, 2025 Branched Schrödinger Bridge Matching released on arXiv and accepted at ICML ExAIT workshop! Come by our poster in Vancouver!
May 01, 2025 PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion accepted at ICML 2025! Come by us at Poster Session 4 to chat (+ free PepTune stickers)

Selected Publications

For a full list, see my publications page or google scholar profile.

  1. entangled.gif
    Entangled Schrödinger Bridge Matching
    Sophia Tang , Yinuo Zhang and Pranam Chatterjee
    arXiv, Preprint, Nov 2025
  2. tr2d2-anim.gif
    TR2-D2: Tree Search Guided Trajectory-Aware Fine-Tuning for Discrete Diffusion
    Sophia Tang* , Yuchen Zhu* , Molei Tao and Pranam Chatterjee
    arXiv, Preprint, Sep 2025
  3. branchsbm.png
    Branched Schrödinger Bridge Matching
    Sophia Tang , Yinuo Zhang , Alexander Tong and Pranam Chatterjee
    arXiv, Preprint, Jun 2025
  4. peptune-vid.gif
    PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion
    Sophia Tang* , Yinuo Zhang* and Pranam Chatterjee
    42nd International Conference on Machine Learning (ICML 2025), Dec 2024