Sophia Tang

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Email: sophtang [at] seas.upenn.edu

Hi! I’m a third-year undergraduate student at the University of Pennsylvania conducting research at the intersection of ML and biological discovery! Aside from research, I’m also a dual degree student studying computer science and business in the Jerome Fisher Program in Management & Technology.

I’m part of the Chatterjee Lab, developing theoretical ML frameworks for biological design, and the Mitchell Lab, designing lipid nanoparticle (LNP)-based delivery vehicles to transport mRNA across the blood-brain barrier. Working across two labs has taught me so much about both the computational and wet-lab sides of bioengineering research, which you can explore on my publications page.

One of my favourite aspects of research is gaining a deep understanding of the theory behind the mechanisms governing the algorithms or biological processes that I study. To share this interest, I began writing in-depth technical guides on my Substack, Alchemy Bio. My most read article, “A Complete Guide to Spherical Equivariant Graph Transformers” is a 2.5-hour long read breaking down the mathematics and physics underlying the structural deep learning architectures for molecules and proteins.

If you’re also passionate about any of these topics, I would love to connect via LinkedIn or X.

Updates

Sep 30, 2025 TR2-D2 is out! Read our paper on off-policy RL for discrete diffusion fine-tuning with multi-objective rewards!
Jun 11, 2025 Branched Schrödinger Bridge Matching released on arXiv and accepted at ICML ExAIT workshop! Come by our poster in Vancouver!
May 01, 2025 PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion accepted at ICML 2025! Come by us at Poster Session 4 to chat (+ free PepTune stickers)
Mar 31, 2025 My review paper on Peptide-Functionalized Nanoparticles for Brain-Targeted Therapeutics is published in Drug Delivery and Translational Research.

Selected Publications

For a full list, see my publications page or google scholar profile.

  1. tr2d2-anim.gif
    TR2-D2: Tree Search Guided Trajectory-Aware Fine-Tuning for Discrete Diffusion
    Sophia Tang* , Yuchen Zhu* , Molei Tao and Pranam Chatterjee
    arXiv, Preprint, Sep 2025
  2. branchsbm.png
    Branched Schrödinger Bridge Matching
    Sophia Tang , Yinuo Zhang , Alexander Tong and Pranam Chatterjee
    arXiv, Preprint, Jun 2025
  3. peptune-vid.gif
    PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion
    Sophia Tang* , Yinuo Zhang* and Pranam Chatterjee
    42nd International Conference on Machine Learning (ICML 2025), Dec 2024
  4. nanoletters.jpeg
    Peptide-Functionalized Lipid Nanoparticles for Targeted Systemic mRNA Delivery to the Brain
    Emily L. Han , Sophia Tang , Dongyoon Kim , Amanda M. Murray , Kelsey L. Swingle , Alex G. Hamilton , Kaitlin Mrksich , Marshall S. Padilla , Rohan Palanki , Jacqueline J. Li and Michael J. Mitchell
    Nano Letters, American Chemical Society (ACS), Dec 2024