Technical Articles

2026

  1. mrnautilus_article.jpg
    Designing the Next Generation of mRNA Therapeutics
    Jun 2026
    A 20-minute walkthrough of our recent preprint, “mRNAutilus: Multi-Objective-Guided Discrete Generation of mRNA with Optimized Therapeutic Properties”
    Article
  2. sbm_article.jpg
    Schrödinger Bridges: A Unifying Lens for Generative Modeling
    Apr 2026
    A 30-minute summary of the key concepts covered in my book titled “Foundations of Schrödinger Bridges for Generative Modeling”
    Article

2025

  1. 2025.png
    2025: research in review
    Dec 2025
    A review and reflection on my research journey in 2025 🔮
    Article
  2. peptune-article.png
    Unlocking the Future of Peptide-Based Precision Medicine
    Jan 2025
    A 15-minute summary of our paper, "PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion"
    Article

2024

  1. rosetta.jpeg
    A Complete Guide to Protein Folding
    Oct 2024
    A 3-hour breakdown of the three-track RoseTTAFold protein prediction model that leverages multi-modal deep learning architectures to transform single sequences into dynamic 3D structures.
    Article
  2. cover.png
    A Complete Guide to Spherical Equivariant Graph Transformers
    Aug 2024
    (released on arXiv) A self-contained guide (99 pages, 46 figures) of the theory behind spherical equivariant graph neural networks (EGNNs) for geometric deep learning.
    Article
  3. moltrans.jpeg
    MolTrans: Transformers for Drug-Target Interaction Prediction
    Jul 2024
    Comprehensive, visual breakdown of the MolTrans model and Transformer encoders for drug-target interaction (DTI) prediction.
    Article