Technical Articles
Long-form breakdowns of the papers and ideas I'm thinking about.
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2026
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Aligning Discrete Generative Models to Any Reward, at Any Length
A 20-minute breakdown of our newest work, “A2D2: Fine-Tuning Any-Length Discrete Diffusion for Adaptive Decoding”
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Designing the Next Generation of mRNA Therapeutics
A 20-minute walkthrough of our recent preprint, “mRNAutilus: Multi-Objective-Guided Discrete Generation of mRNA with Optimized Therapeutic Properties”
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Schrödinger Bridges: A Unifying Lens for Generative Modeling
A 30-minute summary of the key concepts covered in my book titled “Foundations of Schrödinger Bridges for Generative Modeling”
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2025
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Unlocking the Future of Peptide-Based Precision Medicine
A 15-minute summary of our paper, "PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion"
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2024
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A Complete Guide to Protein Folding
A 3-hour breakdown of the three-track RoseTTAFold protein prediction model that leverages multi-modal deep learning architectures to transform single sequences into dynamic 3D structures.
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A Complete Guide to Spherical Equivariant Graph Transformers
(released on arXiv) A self-contained guide (99 pages, 46 figures) of the theory behind spherical equivariant graph neural networks (EGNNs) for geometric deep learning.
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MolTrans: Transformers for Drug-Target Interaction Prediction
Comprehensive, visual breakdown of the MolTrans model and Transformer encoders for drug-target interaction (DTI) prediction.
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